PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0159s00030.1
Common NameLR48_Vigan05g147900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 233aa    MW: 26014.8 Da    PI: 7.8756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0159s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-092978455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +++Er+RR+++++ +++L +llP+ +  ++ + +  a+i  +A++YIksL+
  Vang0159s00030.1 29 ERKIVERNRRNKMKNLYSQLNSLLPShN--PKEGIPVRAQI-GEAIKYIKSLE 78
                      5689**********************66..56666777776.99******996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.93E-72382No hitNo description
SuperFamilySSF474591.03E-1224102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3122577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-102798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-72978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00163183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLMVSNLRNS RANDQQQPST NQPSSEKVER KIVERNRRNK MKNLYSQLNS LLPSHNPKEG  60
IPVRAQIGEA IKYIKSLETK VKMSKEKKER LLEKKRTLSG CSSNASEAKG SQNPPKIEVH  120
ETGSAIQVIL TCGVDKNFIF CEILRILCEL NVEVVSINST MVGDSVMHAV HCEVGQFQFG  180
AGKVSEMLKW IVNVSFGDDE KIDPELSDYG IGTTDNTWVL LDPTLDIGLP PYP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540366.19e-79PREDICTED: transcription factor bHLH36-like
TrEMBLA0A0L9UMU71e-173A0A0L9UMU7_PHAAN; Uncharacterized protein
STRINGGLYMA12G33260.13e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-32bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]